Showing : design formula • reset
8
votes
5
replies
8.6k
views
Understanding interaction term in DESeq2
deseq2 design formula log fold change
updated 16 months ago by 43k • written 5.4 years ago by ▴ 40
0
votes
2
replies
1.2k
views
DESeq2 design formula
deseq2 design formula
updated 5.9 years ago by ★ 1.4k • written 5.9 years ago by • 0
1
vote
2
replies
1.3k
views
Time series experiment analysis in DEseq2 without T=0 and three independent experiments with linked samples
deseq2 rnaseq repeated measures time series design formula
updated 5.9 years ago by 43k • written 5.9 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Design of time-course experiment in DESeq2
deseq2 design design formula time course lrt
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
0
votes
2
replies
1.2k
views
Differential Expression Analysis on a Subset Derived from a Previous Contrast in edgeR or DESeq2
deseq2 design formula design matrix edgeR ATAC
updated 6.0 years ago by 53k • written 6.0 years ago by • 0
5 results • Page 1 of 1
Recent ...
Replies
Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Popular Question to Dario Strbenac ★ 1.6k
Scholar to Nikos Ignatiadis ▴ 180
Locations • All
United States, 43 minutes ago
WEHI, Melbourne, Australia, 48 minutes ago
Pakistan, 3 hours ago
United States, 3 hours ago
Indonesia, 5 hours ago
Traffic: 885 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6